From Optflux
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- 18:54, 13 December 2012 (diff | hist) . . (0) . . N File:FVaPlotGUI.png (current)
- 18:54, 13 December 2012 (diff | hist) . . (0) . . N File:FvaPlotMenu.png (current)
- 18:45, 13 December 2012 (diff | hist) . . (+6) . . OptFlux3:SIM:VarPlot
- 18:44, 13 December 2012 (diff | hist) . . (+543) . . OptFlux3:SIM:ZeroFluxFVA (current)
- 18:43, 13 December 2012 (diff | hist) . . (0) . . N File:FvaZFclip.png (current)
- 18:43, 13 December 2012 (diff | hist) . . (0) . . N File:FvaZFgui.png (current)
- 18:41, 13 December 2012 (diff | hist) . . (0) . . N File:FvaZFmenu.png (current)
- 18:35, 13 December 2012 (diff | hist) . . (-323) . . OptFlux3:SIM:FluxLim (current)
- 18:35, 13 December 2012 (diff | hist) . . (0) . . N File:FlClip.png (current)
- 18:35, 13 December 2012 (diff | hist) . . (0) . . N File:FLGUI.png (current)
- 18:34, 13 December 2012 (diff | hist) . . (0) . . N File:FLmenu.png (current)
- 18:20, 13 December 2012 (diff | hist) . . (-1) . . Table format Reader (current)
- 18:18, 13 December 2012 (diff | hist) . . (+45) . . OptFlux3:MR (current)
- 18:16, 13 December 2012 (diff | hist) . . (+564) . . Create Environmental conditions (current)
- 18:15, 13 December 2012 (diff | hist) . . (0) . . N File:Eclip.png (current)
- 18:12, 13 December 2012 (diff | hist) . . (0) . . N File:Ec2.png (current)
- 18:08, 13 December 2012 (diff | hist) . . (+320) . . N Create Environmental conditions (Created page with "Environmental conditions (ECs) can be used to define the values of uptake fluxes, i.e. the rates at which metabolites are consumed and thus can be used to define media for the...")
- 18:08, 13 December 2012 (diff | hist) . . (0) . . N File:ECmenu.png (current)
- 18:03, 13 December 2012 (diff | hist) . . (+38) . . HowTos:OptFlux3
- 11:35, 13 December 2012 (diff | hist) . . (+8) . . HowTos:OptFlux3 (→Create)
- 11:34, 13 December 2012 (diff | hist) . . (+3) . . HowTos:OptFlux3 (→ole)
- 11:33, 13 December 2012 (diff | hist) . . (-24) . . HowTos:OptFlux3 (→Project Creation)
- 11:33, 13 December 2012 (diff | hist) . . (+36) . . HowTos:OptFlux3
- 19:24, 6 December 2012 (diff | hist) . . (+31) . . HowTos:OptFlux3
- 19:21, 6 December 2012 (diff | hist) . . (+35) . . HowTos:OptFlux3 (→HowTos for OptFlux 3)
- 17:29, 4 December 2012 (diff | hist) . . (+1) . . HowTos:OptFlux3
- 17:29, 4 December 2012 (diff | hist) . . (+41) . . HowTos:OptFlux3
- 17:26, 4 December 2012 (diff | hist) . . (-86) . . CORE:Readers:Drains
- 17:19, 4 December 2012 (diff | hist) . . (+82) . . CORE:Readers:Drains
- 17:18, 4 December 2012 (diff | hist) . . (0) . . N File:BiggRegexp.png (current)
- 17:17, 4 December 2012 (diff | hist) . . (0) . . N File:Drainsheuristic.png (current)
- 17:17, 4 December 2012 (diff | hist) . . (0) . . N File:DontDoDrains.png (current)
- 17:16, 4 December 2012 (diff | hist) . . (+1,835) . . N CORE:Readers:Drains (Created page with "In order to be possible to make simulations with a model there must be an "unbalance", where reactants enter the network and product are produced. This extra cellular infomati...")
- 16:35, 4 December 2012 (diff | hist) . . (+842) . . N Table format Reader (Created page with "The table format reader allows the user to load models in TSV and CSV file formats.<br> You can check for examples in Case Study. <br> It is necessary to give 2 files so t...")
- 16:33, 4 December 2012 (diff | hist) . . (0) . . N File:Tableconfig.png (current)
- 16:30, 4 December 2012 (diff | hist) . . (0) . . N File:TableFiles.png (current)
- 16:25, 4 December 2012 (diff | hist) . . (+8) . . Cell Designer Reader (current)
- 16:25, 4 December 2012 (diff | hist) . . (+37) . . Cell Designer Reader
- 16:24, 4 December 2012 (diff | hist) . . (+231) . . N Cell Designer Reader (Created page with "This reader comes with the cell designer plugin. It's an extension of the SBML Reader, the only difference is that the file has cell designer annotations, allowing OptFlux to ...")
- 16:23, 4 December 2012 (diff | hist) . . (+9) . . OptFlux Readers
- 16:21, 4 December 2012 (diff | hist) . . (+771) . . N Flat Files Reader (Created page with "Flat files reader uses simple text files to build a model. You can check some examples in CaseStudy page. It uses 4 files 3 of which are mandatory. * <b>Reactions file</...") (current)
- 16:19, 4 December 2012 (diff | hist) . . (0) . . N File:Flatconfig.png (current)
- 16:17, 4 December 2012 (diff | hist) . . (0) . . N File:Step2flat.png (current)
- 16:08, 4 December 2012 (diff | hist) . . (-51) . . OptFlux3:SIM:UnderOverExpression
- 16:08, 4 December 2012 (diff | hist) . . (0) . . OptFlux3:SIM:UnderOverExpression
- 16:08, 4 December 2012 (diff | hist) . . (0) . . OptFlux3:SIM:UnderOverExpression
- 16:02, 4 December 2012 (diff | hist) . . (-3) . . OptFlux3:MR
- 16:02, 4 December 2012 (diff | hist) . . (+343) . . OptFlux3:MR
- 16:01, 4 December 2012 (diff | hist) . . (0) . . N File:Step2DB.png (current)
- 16:00, 4 December 2012 (diff | hist) . . (0) . . File:Step4biomass.png (Bnoronha uploaded a new version of "File:Step4biomass.png") (current)
- 15:58, 4 December 2012 (diff | hist) . . (+340) . . N OptFlux3:MR (Created page with "One alternative option for creating a project is to import the model from the OptFlux’s repository. This is an option that guarantees the import of models collected from!lit...")
- 15:54, 4 December 2012 (diff | hist) . . (+7) . . OptFlux3:CORE:NewProject
- 15:53, 4 December 2012 (diff | hist) . . (+38) . . OptFlux Readers
- 15:52, 4 December 2012 (diff | hist) . . (+10) . . OptFlux Readers
- 15:52, 4 December 2012 (diff | hist) . . (+44) . . SBML Reader
- 15:50, 4 December 2012 (diff | hist) . . (+35) . . OptFlux3:SIM:Knockouts
- 15:50, 4 December 2012 (diff | hist) . . (+305) . . N SBML Reader (Created page with "SBML is a XML dialect created for the represention of Systems Biology models. Check the site www.sbml.org to know more. <br><br> SBML Reader only needs the sbml file to build ...")
- 15:49, 4 December 2012 (diff | hist) . . (0) . . N File:Step2sbml.png (current)
- 15:46, 4 December 2012 (diff | hist) . . (+73) . . OptFlux3:CORE:NewProject
- 15:44, 4 December 2012 (diff | hist) . . (+258) . . N OptFlux Readers (Created page with "OptFlux uses a set of readers that allow the building of metabolic models. There are several readers implemented each with it's own specifications. *SBML Reader *[[OptFl...")
- 13:57, 4 December 2012 (diff | hist) . . (+165) . . OptFlux3:CORE:NewProject
- 13:57, 4 December 2012 (diff | hist) . . (0) . . N File:Newprojclip.png (current)
- 13:55, 4 December 2012 (diff | hist) . . (0) . . N File:Step4biomass.png
- 13:55, 4 December 2012 (diff | hist) . . (+416) . . OptFlux3:CORE:NewProject
- 13:46, 4 December 2012 (diff | hist) . . (+428) . . OptFlux3:CORE:NewProject
- 13:35, 4 December 2012 (diff | hist) . . (+249) . . OptFlux3:CORE:NewProject
- 13:35, 4 December 2012 (diff | hist) . . (0) . . N File:Wizardstep1.png (current)
- 13:31, 4 December 2012 (diff | hist) . . (+256) . . N OptFlux3:CORE:NewProject (Created page with "To begin the creation of a new project, you have to start the New Project wizard available through the File Menu or the Toolbar. <br><br> Image:Newprojmenu.png <br><br> Yo...")
- 13:31, 4 December 2012 (diff | hist) . . (0) . . N File:Newprojmenu.png (current)
- 12:09, 4 December 2012 (diff | hist) . . (+27) . . HowTos:OptFlux3
- 12:08, 4 December 2012 (diff | hist) . . (-35) . . OptFlux3:SIM:Knockouts
- 12:07, 4 December 2012 (diff | hist) . . (-23) . . OptFlux3:SIM:UnderOverExpression
- 12:06, 4 December 2012 (diff | hist) . . (+64) . . OptFlux3:SIM:UnderOverExpression
- 12:06, 4 December 2012 (diff | hist) . . (0) . . N File:GeneUO01.png (current)
- 12:05, 4 December 2012 (diff | hist) . . (0) . . N File:ReactionUO01.png (current)
- 12:05, 4 December 2012 (diff | hist) . . (+28) . . OptFlux3:SIM:UnderOverExpression
- 12:03, 4 December 2012 (diff | hist) . . (0) . . N File:UOmenu.png (current)
- 12:03, 4 December 2012 (diff | hist) . . (+1,595) . . OptFlux3:SIM:UnderOverExpression
- 11:55, 4 December 2012 (diff | hist) . . (+900) . . N OptFlux3:SIM:UnderOverExpression (Created page with "<b>How to do a over/under expression simulation</b><br> OptFlux allows the simulation of mutants including over/under expression of genes or reactions. The user interface for...")
- 11:45, 4 December 2012 (diff | hist) . . (+76) . . HowTos:OptFlux3 (→HowTos for OptFlux 3)
- 11:44, 4 December 2012 (diff | hist) . . (+3) . . HowTos:OptFlux3
- 11:43, 4 December 2012 (diff | hist) . . (+2) . . HowTos:OptFlux3 (→HowTos for OptFlux 3)
- 11:43, 4 December 2012 (diff | hist) . . (+42) . . HowTos:OptFlux3
- 11:36, 4 December 2012 (diff | hist) . . (+1,752) . . N OptFlux3:SIM:Knockouts (Created page with "OptFlux allows the user to perform a simulation of a mutant strain, i.e. of the model with some genetic modifications, in this case a set of gene or reaction deletions. Acces...")
- 11:35, 4 December 2012 (diff | hist) . . (0) . . N File:ReactionKO1.png (current)
- 11:34, 4 December 2012 (diff | hist) . . (0) . . N File:GeneKO1.png (current)
- 11:32, 4 December 2012 (diff | hist) . . (0) . . N File:Mutantmenu.png (current)
- 11:06, 4 December 2012 (diff | hist) . . (+37) . . OptFlux3:SIM:WildType
- 11:05, 4 December 2012 (diff | hist) . . (0) . . N File:Wildclipboard.png (current)
- 19:25, 29 November 2012 (diff | hist) . . (-33) . . OptFlux3:SIM:WildType
- 19:16, 29 November 2012 (diff | hist) . . (+133) . . OptFlux3:SIM:WildType
- 19:13, 29 November 2012 (diff | hist) . . (0) . . N File:WildType3.png (current)
- 19:12, 29 November 2012 (diff | hist) . . (+760) . . OptFlux3:SIM:WildType
- 19:05, 29 November 2012 (diff | hist) . . (0) . . N File:Wildemnu2.png (current)
- 18:54, 29 November 2012 (diff | hist) . . (0) . . OptFlux3:SIM:WildType
- 18:53, 29 November 2012 (diff | hist) . . (+390) . . OptFlux3:SIM:WildType
- 18:50, 29 November 2012 (diff | hist) . . (0) . . N File:Wildmenu1.png (current)
- 18:42, 29 November 2012 (diff | hist) . . (-21) . . OptFlux3:SIM:WildType
- 18:39, 29 November 2012 (diff | hist) . . (+333) . . N OptFlux3:SIM:WildType (Created page with "<b>How to do a wild type simulation</b><br> <br> OptFlux allows the user to perform a simulation of the "wild-type" strain, i.e. of the model with no genetic modifications.<br...")
- 18:14, 29 November 2012 (diff | hist) . . (+35) . . HowTos:OptFlux3
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