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=== Elementary Flux Mode === | === Elementary Flux Mode === | ||
− | In Optflux, there is a plugin that gives the tool the capability to determine the set of Elementary Flux Modes (EFMs) of a model. This plugin also provides an interface that allows | + | In Optflux, there is a plugin that gives the tool the capability to determine the set of Elementary Flux Modes (EFMs) of a model. This plugin also provides an interface that allows �ltering the results, including the selection of EFMs based on presence/absence of external metabolites or sorting by yield. It is possible to select sets of EFMs browsing these results, and it is possible to visualize the EFMs in a column-wise table. From this point, it is possible to obtain the flux values for each EFM. The visualization plugin converts these flux distributions to an overlap, in a similar way to the one used for the simulation results. Considering that in this case, we are dealing with simple flux distributions, only the thickness and labels of the edges are passed to the overlap, and a visual �lter can be applied that hides the zero value |
+ | fluxes, allowing a visualization of the EFM in the visualization tool. The overlaps obtained from EFMs are stored in the category "Flux Distributions". | ||
[[Image : C4 EFMvis2.png | 450px ]] | [[Image : C4 EFMvis2.png | 450px ]] |