From Optflux
(→Analysis) |
(→Help) |
||
(29 intermediate revisions by 4 users not shown) | |||
Line 2: | Line 2: | ||
== Project And Model Handling== | == Project And Model Handling== | ||
− | |||
*[[OptFlux3:CORE:NewProject|New project]] | *[[OptFlux3:CORE:NewProject|New project]] | ||
**[[CORE:Readers:Drains | Drains Definition]] | **[[CORE:Readers:Drains | Drains Definition]] | ||
**[[OptFlux Readers]] | **[[OptFlux Readers]] | ||
***[[SBML Reader]] | ***[[SBML Reader]] | ||
+ | ***[[Flat Files Reader]] | ||
+ | ***[[Metatool]] | ||
***[[OptFlux3:MR | OptFlux Repository]] | ***[[OptFlux3:MR | OptFlux Repository]] | ||
− | |||
***[[Table format Reader]] | ***[[Table format Reader]] | ||
***[[Cell Designer Reader]] | ***[[Cell Designer Reader]] | ||
*[[OptFlux3:CORE:ImportProject | Import Project]] | *[[OptFlux3:CORE:ImportProject | Import Project]] | ||
*[[OptFlux3:SMP |Model Simplification]] | *[[OptFlux3:SMP |Model Simplification]] | ||
+ | |||
+ | === Model Handling === | ||
+ | |||
+ | *[[Create Environmental conditions]] | ||
== Simulation == | == Simulation == | ||
Line 31: | Line 35: | ||
== Optimization == | == Optimization == | ||
− | *Evolutionary | + | *[[OptFlux3:Evolutionary | Evolutionary]] |
*[[OptFlux3:OPK | Optknock]] | *[[OptFlux3:OPK | Optknock]] | ||
== Help == | == Help == | ||
*Repository Manager | *Repository Manager | ||
+ | **[[KnownProblems:RepositoryManager | Known Problems]] | ||
*Updates | *Updates | ||
+ | *Preferences | ||
+ | **[[Cplex Configuration:Preferences | Cplex Configuration]] | ||
== Plugins == | == Plugins == | ||
Line 42: | Line 49: | ||
*[[OptFlux3:MR | Model Repository]] | *[[OptFlux3:MR | Model Repository]] | ||
*[[OptFlux3:SIM | Simulation]] | *[[OptFlux3:SIM | Simulation]] | ||
− | *[[OptFlux3: | + | *[[OptFlux3:Evolutionary | Optimization]] |
*[[OptFlux3:SMP | Simplification]] | *[[OptFlux3:SMP | Simplification]] | ||
− | *[[OptFlux3:BC:balancechecker | Mass Balance Validator]] | + | *[[OptFlux3:BC:balancechecker:hgfhgf | Mass Balance Validator]] |
*[[OptFlux3:OPK | OptKnock]] | *[[OptFlux3:OPK | OptKnock]] | ||
− | |||
*[[OptFlux3:TNA | Network Topology Analysis (TNA)]] | *[[OptFlux3:TNA | Network Topology Analysis (TNA)]] | ||
+ | *[[OptFlux3:EFM | Elementary Flux Modes]] | ||
+ | *[[OptFlux3:RT | Reg4OptFlux - Regulatory plugin]] | ||
+ | *[[OptFlux3:METAVIZ | Metabolic Network Visualization Plugin]] | ||
+ | *[[OptFlux3:MFA | Metabolic Flux Analysis]] | ||
+ | *[[OptFlux3:COBRA | Cobra4OptFlux - Cobra plugin]] | ||
+ | *[[OptFlux3:Serialization | Serialization plugin]] |
Latest revision as of 10:16, 21 December 2016
Contents
Project And Model Handling[edit]
Model Handling[edit]
Simulation[edit]
Analysis[edit]
- Critical Genes/Reactions
- Balance Checker
- Flux Variability Analysis
- Structural Analysis
Optimization[edit]
Help[edit]
- Repository Manager
- Updates
- Preferences