From Optflux
Warning: You are not logged in. Your IP address will be publicly visible if you make any edits. If you log in or create an account, your edits will be attributed to your username, along with other benefits.
The edit can be undone.
Please check the comparison below to verify that this is what you want to do, and then save the changes below to finish undoing the edit.
Latest revision | Your text | ||
Line 1: | Line 1: | ||
{{DISPLAYTITLE:How Tos for Optflux 3}} | {{DISPLAYTITLE:How Tos for Optflux 3}} | ||
− | == Project | + | == Project == |
− | *[[ | + | |
− | **[[ | + | *[[NewProjectOptflux3|New project]] |
+ | **[[Drains Definition]] | ||
**[[OptFlux Readers]] | **[[OptFlux Readers]] | ||
***[[SBML Reader]] | ***[[SBML Reader]] | ||
+ | ***[[OptFlux Repository]] | ||
***[[Flat Files Reader]] | ***[[Flat Files Reader]] | ||
− | |||
− | |||
***[[Table format Reader]] | ***[[Table format Reader]] | ||
***[[Cell Designer Reader]] | ***[[Cell Designer Reader]] | ||
− | * | + | *Import Project |
− | * | + | *Model Simplification |
− | |||
− | |||
− | |||
− | |||
== Simulation == | == Simulation == | ||
− | *[[ | + | *[[How to simulate a Wild type | Wild Type]] |
− | *[[ | + | *[[How to do a mutant simulation in Optflux3 | Knockouts]] |
− | *[[OptFlux3 | + | *[[Hot to do an Under and Over Expression Simulation in OptFlux3 | Under-Over Expression]] |
== Analysis == | == Analysis == | ||
− | * | + | *Critial Genes/Reactions |
− | * | + | *Balance Checker |
*Flux Variability Analysis | *Flux Variability Analysis | ||
− | ** | + | **Zero-flux values |
− | ** | + | **Flux-variation plot |
− | ** | + | **Flux limits |
− | + | ** | |
− | |||
− | ** | ||
== Optimization == | == Optimization == | ||
− | * | + | *Evolutionary |
− | * | + | *Optknock |
+ | |||
== Help == | == Help == | ||
*Repository Manager | *Repository Manager | ||
− | |||
*Updates | *Updates | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− |